|
|
Database: mm39 Primary Table: all_mrna Row Count: 2,039,934   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment On download server: MariaDB table dump directory
field | example | SQL type | description |
bin | 608 | smallint(5) unsigned | Indexing field to speed chromosome range queries. |
matches | 27 | int(10) unsigned | Number of bases that match that aren't repeats |
misMatches | 0 | int(10) unsigned | Number of bases that don't match |
repMatches | 0 | int(10) unsigned | Number of bases that match but are part of repeats |
nCount | 0 | int(10) unsigned | Number of 'N' bases |
qNumInsert | 0 | int(10) unsigned | Number of inserts in query |
qBaseInsert | 0 | int(10) unsigned | Number of bases inserted in query |
tNumInsert | 0 | int(10) unsigned | Number of inserts in target |
tBaseInsert | 0 | int(10) unsigned | Number of bases inserted in target |
strand | - | char(2) | + or - for strand. First character query, second target (optional) |
qName | AB351640 | varchar(255) | Query sequence name |
qSize | 27 | int(10) unsigned | Query sequence size |
qStart | 0 | int(10) unsigned | Alignment start position in query |
qEnd | 27 | int(10) unsigned | Alignment end position in query |
tName | chr1 | varchar(255) | Target sequence name |
tSize | 195154279 | int(10) unsigned | Target sequence size |
tStart | 3056357 | int(10) unsigned | Alignment start position in target |
tEnd | 3056384 | int(10) unsigned | Alignment end position in target |
blockCount | 1 | int(10) unsigned | Number of blocks in alignment |
blockSizes | 27, | longblob | Size of each block |
qStarts | 0, | longblob | Start of each block in query. |
tStarts | 3056357, | longblob | Start of each block in target. |
|
| |
|
|
Connected Tables and Joining Fields
|
|
Sample Rows
|
|
bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
---|
608 | 27 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AB351640 | 27 | 0 | 27 | chr1 | 195154279 | 3056357 | 3056384 | 1 | 27, | 0, | 3056357, |
608 | 25 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AB350154 | 25 | 0 | 25 | chr1 | 195154279 | 3056359 | 3056384 | 1 | 25, | 0, | 3056359, |
608 | 24 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AB352938 | 24 | 0 | 24 | chr1 | 195154279 | 3056360 | 3056384 | 1 | 24, | 0, | 3056360, |
608 | 45 | 0 | 0 | 0 | 0 | 0 | 1 | 428 | + | LF288482 | 45 | 0 | 45 | chr1 | 195154279 | 3056362 | 3056835 | 2 | 21,24, | 0,21, | 3056362,3056811, |
608 | 45 | 0 | 0 | 0 | 0 | 0 | 1 | 428 | + | MA524059 | 45 | 0 | 45 | chr1 | 195154279 | 3056362 | 3056835 | 2 | 21,24, | 0,21, | 3056362,3056811, |
608 | 30 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | DQ685528 | 30 | 0 | 30 | chr1 | 195154279 | 3056757 | 3056787 | 1 | 30, | 0, | 3056757, |
608 | 26 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | DQ706727 | 28 | 0 | 26 | chr1 | 195154279 | 3056758 | 3056784 | 1 | 26, | 0, | 3056758, |
608 | 29 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | + | DQ540177 | 29 | 0 | 29 | chr1 | 195154279 | 3056760 | 3056790 | 2 | 6,23, | 0,6, | 3056760,3056767, |
608 | 28 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AB351058 | 28 | 0 | 28 | chr1 | 195154279 | 3056764 | 3056792 | 1 | 28, | 0, | 3056764, |
608 | 26 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | DQ567456 | 27 | 0 | 26 | chr1 | 195154279 | 3056802 | 3056828 | 1 | 26, | 0, | 3056802, |
|
Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
| |
|
|
|