Schema for mrnaOrientInfo
  Database: felCat9    Primary Table: mrnaOrientInfo    Row Count: 3,330   Data last updated: 2019-03-20
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 601smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrA1varchar(255) values Reference sequence chromosome or scaffold
chromStart 2150881int(10) unsigned range Start position in chromosome
chromEnd 2156707int(10) unsigned range End position in chromosome
name JV728505varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        felCat9.all_mrna.qName (via mrnaOrientInfo.name)
      felCat9.refFlat.name (via mrnaOrientInfo.name)
      felCat9.refGene.name (via mrnaOrientInfo.name)
      felCat9.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
601chrA121508812156707JV72850530000
631chrA160840676093231JV72893540000
79chrA168122866858612JV72899670100
640chrA172888907290537JV72924310000
642chrA175597757563597EU28655210000
659chrA197390349743947JV72855840000
669chrA11102792311031470JX98309610006
673chrA11156327111622511AB1079552414000
673chrA11162535711655449JV72929540000
673chrA11162537411655489JV72929440000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.