Schema for estOrientInfo
  Database: chlSab2    Primary Table: estOrientInfo    Row Count: 39,406   Data last updated: 2016-09-23
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 11480int(10) unsigned range Start position in chromosome
chromEnd 12210int(10) unsigned range End position in chromosome
name JK120526varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        chlSab2.all_est.qName (via estOrientInfo.name)
      chlSab2.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr11148012210JK12052600000
585chr11370014362JK10016800000
585chr11429715009JK10055300000
585chr11449314730JK11995000000
585chr12147722247JK10789200000
585chr12300324875JK11444730000
585chr12508125389JK099973000170
585chr14955763470JK11738580000
585chr14956063470JK11928981000
585chr14956158769JK10951944000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.