Schema for xenoRefFlat
  Database: ce10    Primary Table: xenoRefFlat    Row Count: 33,703   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName LOC100527579varchar(255) values Name of gene as it appears in genome browser.
name NM_001251252varchar(255) values Name of gene
chrom chrIIIvarchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 5940943int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 5941171int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 5940943int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 5941171int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 5940943,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 5941171,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        ce10.xenoMrna.qName (via xenoRefFlat.name)
      ce10.xenoRefGene.name (via xenoRefFlat.name)
      ce10.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
LOC100527579NM_001251252chrIII+594094359411715940943594117115940943,5941171,
LOC100808748NM_001252934chrIV-350806935094813508069350948133508069,3508508,3509385,3508241,3508597,3509481,
smu1NM_203857chrI+12996110130041181299611013004118412996110,12996551,12997956,13004046,12996255,12996946,12998070,13004118,
FCF1NM_001037452chrI-950483395054779504833950547739504833,9505154,9505417,9504972,9505246,9505477,
TUBA1BNM_001044544chrIII-313173931377413131739313774143131739,3133682,3134722,3137518,3132021,3134117,3135117,3137741,
HSP81-3NM_124983chrV+14686160146883141468616014688314414686160,14686336,14687098,14688146,14686289,14686675,14688082,14688314,
SOD2NM_001024466chrI+843474884355728434748843557238434748,8435320,8435434,8434910,8435404,8435572,
SOD2NM_001024465chrI+843474884355728434748843557248434748,8434972,8435320,8435434,8434910,8435059,8435404,8435572,
PRMT8NM_001206873chrV-20268731202696162026873120269616320268731,20269255,20269406,20269229,20269300,20269616,
KIF3ANM_001206854chrIII+2220602269682220602269685222060,222881,223288,223905,226827,222205,222994,223513,224070,226968,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.