Schema for mrnaOrientInfo
  Database: sorAra2    Primary Table: mrnaOrientInfo    Row Count: 5   Data last updated: 2014-08-29
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom AALT02196315varchar(255) values Reference sequence chromosome or scaffold
chromStart 756int(10) unsigned range Start position in chromosome
chromEnd 916int(10) unsigned range End position in chromosome
name AB047244varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 46smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 68smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      sorAra2.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585AALT02196315756916AB0472440460680
588JH798163476681484707AB0472488690900
595JH79831413667031375286AB0472444440680
629JH79814858483375861391AY13447160000
704JH7981641571835015725241AJ2231493240470

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.