Schema for estOrientInfo
  Database: hg16    Primary Table: estOrientInfo    Row Count: 8,199,965   Data last updated: 2019-09-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 4224int(10) unsigned Start position in chromosome
chromEnd 4624int(10) unsigned End position in chromosome
name AA936549varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 9smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 35smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hg16.all_est.qName (via estOrientInfo.name)
      hg16.altGraphX.mrnaRefs (via estOrientInfo.name)
      hg16.est.qName (via estOrientInfo.name)
      hg16.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr142244624AA936549009035
585chr142634643AA293168000023
585chr142634662AA458890000023
585chr142644848AA478024-100022
585chr142664859AA279139-1013033
585chr142664903AA853941-101021
585chr1426615855AA5885420030050
585chr142674879AA565014-100019
585chr142684455AA411542000180
585chr142684677AA485730000018

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.