Schema for estOrientInfo
  Database: galGal6    Primary Table: estOrientInfo    Row Count: 584,670   Data last updated: 2018-10-16
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 856smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 35623123int(10) unsigned Start position in chromosome
chromEnd 35626201int(10) unsigned End position in chromosome
name AA495708varchar(255) Accession of EST
intronOrientation 3smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        galGal6.all_est.qName (via estOrientInfo.name)
      galGal6.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
856chr13562312335626201AA49570830000
1180chr17801971078020445AA49570130000
1535chr1124544468124545959AA49571920000
728chr111874740618748911AA49571530000
591chr19846726847783AA49569631000
699chr21501625915017612AA49569910000
668chr201089609510898593AA49570430000
626chr2353760495378333AA49570030000
609chr2632454383253211AA49571450000
630chr2759894015991561AA49571830000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.