Schema for estOrientInfo
  Database: galGal4    Primary Table: estOrientInfo    Row Count: 600,801   Data last updated: 2020-05-08
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 855smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 35463638int(10) unsigned Start position in chromosome
chromEnd 35466716int(10) unsigned End position in chromosome
name AA495708varchar(255) Accession of EST
intronOrientation 3smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        galGal4.all_est.qName (via estOrientInfo.name)
      galGal4.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
855chr13546363835466716AA49570830000
1171chr17683315976833820AA49570130000
1521chr1122807206122808701AA49571920000
723chr111819263118194136AA49571530000
590chr19705790706847AA49569631000
698chr21493257614935778AA49569920000
670chr201124077911243277AA49570430000
624chr2351796395181068AA49570020000
609chr2631865613194335AA49571450000
610chr2733667913368958AA49571830000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.