Schema for estOrientInfo
  Database: calJac3    Primary Table: estOrientInfo    Row Count: 370,563   Data last updated: 2016-06-11
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 606smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 2867115int(10) unsigned range Start position in chromosome
chromEnd 2867796int(10) unsigned range End position in chromosome
name EH381499varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        calJac3.all_est.qName (via estOrientInfo.name)
      calJac3.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
606chr128671152867796EH38149900000
662chr11013923010139906EH38128400000
680chr11257939912580077EH38204200000
685chr11314687813147558EH38123100000
695chr11453964714540327EH38130600000
695chr11453965714540337EH38232500000
696chr11464829014648969EH38050500000
714chr11692903516929714EH38042200000
723chr11819258718193264EH38194800000
751chr12180599521806676EH38101800000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.