Schema for xenoRefFlat
  Database: caeJap1    Primary Table: xenoRefFlat    Row Count: 203,513   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName vap-2varchar(255) values Name of gene as it appears in genome browser.
name NM_001313448varchar(255) values Name of gene
chrom chrUnvarchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 37733017int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 37735227int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 37733017int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 37735227int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 10int(10) unsigned range Number of exons
exonStarts 37733017,37733156,37733363,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 37733111,37733314,37733470,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        caeJap1.xenoMrna.qName (via xenoRefFlat.name)
      caeJap1.xenoRefGene.name (via xenoRefFlat.name)
      caeJap1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
vap-2NM_001313448chrUn+377330173773522737733017377352271037733017,37733156,37733363,37733524,37733713,37734155,37734419,37734556,37734773,37735019,37733111,37733314,37733470,37733669,37733806,37734364,37734498,37734706,37734880,37735227,
vap-2NM_001313449chrUn+37733284377352273773328437735227937733284,37733363,37733524,37733713,37734155,37734419,37734556,37734773,37735019,37733314,37733470,37733669,37733806,37734364,37734498,37734706,37734880,37735227,
sma-9NM_001375119chrUn-377403573775393037741552377539303737740357,37741552,37742423,37742476,37742614,37742649,37742739,37744546,37744587,37745597,37745795,37746336,37746614,37746896,37 ...37740398,37741698,37742462,37742484,37742624,37742694,37742763,37744549,37744719,37745747,37745981,37746522,37746719,37746898,37 ...
slc1a3aNM_212640chrUn+19764463197656581976446319765658219764463,19765505,19764529,19765658,
RPS17NM_001265804chrUn+56005006560053295600500656005329256005006,56005210,56005163,56005329,
CG4341NM_134714chrUn-635093863510346350938635103416350938,6351034,
LOC100193342NM_001358712chrUn-1194818811194823281194818811194823282119481881,119482223,119481977,119482328,
LOC100193342NM_001358712chrUn-81582485815835668158248581583566281582485,81583314,81582710,81583566,
RGS7NM_001350116chrUn+51116826511201715111682651120171451116826,51116995,51119010,51120041,51116919,51117149,51119152,51120171,
NR_151866chrUn-1562269081562270221562270221562270221156226908,156227022,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.