Schema for mrnaOrientInfo
  Database: bosTau8    Primary Table: mrnaOrientInfo    Row Count: 36,081   Data last updated: 2020-08-20
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 587smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 351707int(10) unsigned range Start position in chromosome
chromEnd 362908int(10) unsigned range End position in chromosome
name BC103185varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 68smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 94smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        bosTau8.all_mrna.qName (via mrnaOrientInfo.name)
      bosTau8.refFlat.name (via mrnaOrientInfo.name)
      bosTau8.refGene.name (via mrnaOrientInfo.name)
      bosTau8.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
587chr1351707362908BC1031853680940
587chr1351726362906BT030515300240
588chr1401205407701BC1128732112000
588chr1459809460828BC110185016000
588chr1463563478996BC1461343160410
588chr1484624492432BC1116621140360
590chr1669918733729BC1029781240470
590chr1709514710143S7287700000
592chr1922634929993M18753600230
592chr1922636929992BC102204616100

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.