Schema for estOrientInfo
  Database: bosTau2    Primary Table: estOrientInfo    Row Count: 2,019,678   Data last updated: 2016-06-03
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 15783int(10) unsigned Start position in chromosome
chromEnd 16180int(10) unsigned End position in chromosome
name AJ674068varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        bosTau2.all_est.qName (via estOrientInfo.name)
      bosTau2.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr11578316180AJ67406800000
585chr12243522927BF60479000000
585chr12683827305DY11966300000
585chr12719736349DN544833-30200
585chr12719927655AJ69688800000
585chr12720627743AM01505500000
585chr12720627743AM01612100000
585chr12720631378CX952345-20000
585chr12726739251CV98369940000
585chr12732839260DT85019940000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.