Schema for ceBlastTab
  Database: sacCer3    Primary Table: ceBlastTab    Row Count: 3,605   Data last updated: 2011-09-02
Format description: Blast alignments of C. elegans genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query Q0045varchar(255) values Name of sequence in this assembly (query)
target MTCE.26varchar(255) values Name of sequence in other assembly (target)
identity 53.58float range Percent identity
aliLength 517int(10) unsigned range Length of alignment
mismatch 231int(10) unsigned range Number of mismatches
gapOpen 5int(10) unsigned range Number of gap openings
qStart 4int(10) unsigned range Start in query (0 based)
qEnd 520int(10) unsigned range End in query (non-inclusive)
tStart 13int(10) unsigned range Start in target (0 based)
tEnd 522int(10) unsigned range End in target (non-inclusive)
eValue 1e-161double range Expectation value
bitScore 566double range Bit score

Connected Tables and Joining Fields
        sacCer3.choExpDistance.query (via ceBlastTab.query)
      sacCer3.choExpDistance.target (via ceBlastTab.query)
      sacCer3.dmBlastTab.query (via ceBlastTab.query)
      sacCer3.drBlastTab.query (via ceBlastTab.query)
      sacCer3.esRegGeneToModule.gene (via ceBlastTab.query)
      sacCer3.esRegGeneToMotif.gene (via ceBlastTab.query)
      sacCer3.esRegUpstreamRegion.name (via ceBlastTab.query)
      sacCer3.hgBlastTab.query (via ceBlastTab.query)
      sacCer3.mmBlastTab.query (via ceBlastTab.query)
      sacCer3.rnBlastTab.query (via ceBlastTab.query)
      sacCer3.sgdBlastTab.query (via ceBlastTab.query)
      sacCer3.sgdBlastTab.target (via ceBlastTab.query)
      sacCer3.sgdCanonical.transcript (via ceBlastTab.query)
      sacCer3.sgdDescription.name (via ceBlastTab.query)
      sacCer3.sgdGene.name (via ceBlastTab.query)
      sacCer3.sgdIsoforms.transcript (via ceBlastTab.query)
      sacCer3.sgdPep.name (via ceBlastTab.query)
      sacCer3.sgdToName.name (via ceBlastTab.query)
      sacCer3.sgdToSwissProt.name (via ceBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
Q0045MTCE.2653.5851723154520135221e-161566
Q0050MTCE.2649.216330146713740.00000000261.6
Q0055MTCE.2654.696427146813750.000000000000373.9
Q0060MTCE.2658.447730148113882e-2097.1
Q0065MTCE.2651.2627713224281132872.9999999999999998e-77285
Q0070MTCE.2658.7732513034328133353.9999999999999996e-111398
Q0085MTCE.1223.9159106498254521990.000342
Q0105MTCE.2137.913642184536733617e-71264
Q0110MTCE.2140.28144841514931451.0000000000000001e-29127
Q0115MTCE.2139.571871111519231884.0000000000000004e-39159

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.