Schema for estOrientInfo
  Database: xenTro2    Primary Table: estOrientInfo    Row Count: 1,386,689   Data last updated: 2016-04-24
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom scaffold_1varchar(255) Reference sequence chromosome or scaffold
chromStart 63int(10) unsigned Start position in chromosome
chromEnd 130int(10) unsigned End position in chromosome
name AL958091varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 3smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      xenTro2.all_est.qName (via estOrientInfo.name)
      xenTro2.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_163130AL95809103000
585scaffold_164129AL88066901000
585scaffold_165128AL88627303000
585scaffold_1635702AL95809103000
585scaffold_1636701AL88066901000
585scaffold_1637700AL88627303000
585scaffold_11746124767AL77853610000
585scaffold_12009025079AL59430700000
585scaffold_15744758282AL879855000014
585scaffold_17595491597AL85481760000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.