Schema for estOrientInfo
  Database: papAnu4    Primary Table: estOrientInfo    Row Count: 152,685   Data last updated: 2018-03-13
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 968smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr14varchar(255) values Reference sequence chromosome or scaffold
chromStart 50247300int(10) unsigned range Start position in chromosome
chromEnd 50249781int(10) unsigned range End position in chromosome
name CV223666varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      papAnu4.all_est.qName (via estOrientInfo.name)
      papAnu4.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
968chr145024730050249781CV22366620000
587chr1356620359190EY27620730000
587chr1372304376920EY28842420000
588chr1403034403900EY27784300000
589chr1612042612271EY28864800000
589chr1612549613411EY28533200000
589chr1615682624807EY27541820000
590chr1657566658361EY27573300000
593chr111052791105477EY28589210000
593chr111078631119495EY28941340000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.