Schema for xenoRefSeqAli
  Database: oviAri1    Primary Table: xenoRefSeqAli    Row Count: 429,715   Data last updated: 2020-08-22
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 73smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 2515int(10) unsigned range Number of bases that match that aren't repeats
misMatches 349int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 4int(10) unsigned range Number of 'N' bases
qNumInsert 10int(10) unsigned range Number of inserts in query
qBaseInsert 3367int(10) unsigned range Number of bases inserted in query
tNumInsert 24int(10) unsigned range Number of inserts in target
tBaseInsert 128739int(10) unsigned range Number of bases inserted in target
strand ++char(2) values + or - for strand. First character query, second target (optional)
qName NM_001133967varchar(255) values Query sequence name
qSize 6333int(10) unsigned range Query sequence size
qStart 72int(10) unsigned range Alignment start position in query
qEnd 6307int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 299839927int(10) unsigned range Target sequence size
tStart 2965int(10) unsigned range Alignment start position in target
tEnd 134572int(10) unsigned range Alignment end position in target
blockCount 25int(10) unsigned range Number of blocks in alignment
blockSizes 84,85,90,110,207,216,207,10...longblob   Size of each block
qStarts 72,184,269,533,643,850,1066...longblob   Start of each block in query.
tStarts 2965,4119,6059,7065,11912,1...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)
      oviAri1.all_est.qName (via xenoRefSeqAli.qName)
      oviAri1.all_mrna.qName (via xenoRefSeqAli.qName)
      oviAri1.refGene.name (via xenoRefSeqAli.qName)
      oviAri1.refSeqAli.qName (via xenoRefSeqAli.qName)
      oviAri1.xenoMrna.qName (via xenoRefSeqAli.qName)
      oviAri1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      oviAri1.xenoRefGene.name (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
7325153490410336724128739++NM_0011339676333726307chr129983992729651345722584,85,90,110,207,216,207,108,105,78,140,20,85,114,88,223,30,104,135,144,189,129,72,24,81,72,184,269,533,643,850,1066,1273,1381,1486,1565,1705,1725,1810,1924,2139,3067,3098,3202,3337,3481,3784,3928,4060,6226,2965,4119,6059,7065,11912,12366,13002,13332,14245,14625,15943,16728,16749,16955,17843,20258,129026,129736,130008,131045,131775,1 ...
732365395046115524127033++NM_1720394414663985chr129983992729761327732573,3,110,90,108,207,216,207,108,105,79,2,143,85,114,87,220,30,3,102,135,140,193,129,75,66,139,142,252,518,626,833,1049,1256,1364,1469,1548,1550,1708,1793,1907,2125,3050,3080,3083,3185,3320,3460,3767,3910,2976,3054,4094,6059,7067,11912,12366,13002,13332,14245,14625,14949,15945,16749,16955,17843,20261,129026,129102,129738,130008,131 ...
732465418048325726128711++NM_13380863471976341chr129983992729761345742773,3,110,89,108,207,216,207,108,105,79,2,143,85,114,88,219,30,3,102,135,144,189,129,74,42,83,197,270,273,383,649,757,964,1180,1387,1495,1600,1679,1681,1839,1924,2038,2257,3181,3211,3214,3316,3451,3595,3898,4042,4170,6258,2976,3054,4094,6059,7067,11912,12366,13002,13332,14245,14625,14949,15945,16749,16955,17843,20262,129026,129102,129738,130008,131 ...
731853494048125020126634++NM_0011736534370463647chr129983992729791319642125,63,45,108,207,216,204,111,107,73,138,84,110,3,88,210,102,135,3,133,186,46,158,266,497,605,812,1028,1232,1343,1450,1526,1685,1769,1879,1882,2102,3083,3185,3320,3323,3461,2979,4125,6094,7067,11912,12366,13005,13332,14248,14630,15945,16750,16955,17337,17842,20262,129738,130008,130157,131048,131778,
7318945730412145721127318++NM_2014745124583986chr129983992729791327682225,78,39,108,207,216,207,111,107,74,138,81,108,87,219,102,135,135,186,51,39,18,58,170,296,524,632,839,1055,1262,1373,1480,1556,1718,1799,1913,2132,3077,3179,3314,3455,3827,3911,3968,2979,4125,6094,7067,11912,12366,13002,13332,14248,14630,15945,16753,16955,17843,20262,129738,130008,131045,131778,132523,132699, ...
7322804340411128325127123++NM_205096436414002chr129983992729851328262619,78,90,13,110,207,216,207,108,105,79,138,20,84,114,87,224,27,6,102,135,144,189,108,90,18,1,102,181,325,442,552,759,975,1182,1290,1395,1476,1614,1635,1719,1833,2047,2976,3003,3009,3111,3246,3390,3693,3837,3984,2985,4125,6059,6206,7065,11912,12366,13002,13332,14245,14625,15945,16728,16750,16955,17843,20257,129026,129642,129738,130008,131 ...
732460414048325726128711++NM_00130136462821236258chr129983992729851345742764,3,110,89,108,207,216,207,108,105,79,2,143,85,114,88,219,30,3,102,135,144,189,129,74,42,83,123,187,190,300,566,674,881,1097,1304,1412,1517,1596,1598,1756,1841,1955,2174,3098,3128,3131,3233,3368,3512,3815,3959,4087,6175,2985,3054,4094,6059,7067,11912,12366,13002,13332,14245,14625,14949,15945,16749,16955,17843,20262,129026,129102,129738,130008,131 ...
7319186070411136520127253++NM_00100685351791104004chr129983992729861327682130,69,87,108,207,216,207,111,102,75,138,84,105,87,219,102,135,135,186,57,69,110,191,275,548,656,863,1079,1286,1397,1499,1580,1739,1823,1937,2156,3110,3212,3347,3488,3863,3935,2986,4116,6049,7067,11912,12366,13002,13332,14248,14625,15945,16750,16955,17843,20262,129738,130008,131045,131778,132538,132699,
10819312020211198721120769++NM_00933340549134054chr2255886266372907033741362626102,133,103,82,129,162,108,47,53,301,95,87,61,47,105,63,57,82,6,17,35,31,49,119,39,41,913,1015,1148,1251,1333,1462,1624,1732,1779,1832,2169,2370,2457,2540,2594,2700,2930,3038,3120,3126,3172,3597,3650,3699,3818,4013 ...37290703,37386534,37389182,37391286,37396790,37397918,37398477,37403887,37404525,37411464,37411801,37412012,37412101,37412183,37 ...
7337818900622656119287++NM_001299644581111794011chr129983992711999131853778,57,27,57,84,198,66,1179,1408,1767,2073,2367,2601,3945,11999,12475,13047,16011,17846,20280,131787,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.