Schema for mrnaOrientInfo
  Database: otoGar3    Primary Table: mrnaOrientInfo    Row Count: 4   Data last updated: 2017-07-04
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 612smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom GL873572varchar(255) values Reference sequence chromosome or scaffold
chromStart 3656670int(10) unsigned range Start position in chromosome
chromEnd 3657420int(10) unsigned range End position in chromosome
name HM803976varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      otoGar3.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
612GL87357236566703657420HM80397600000
594GL87373013028331306706JF96764670000
591GL873581813404813489MF19145500000
586GL873805240328240408MF19150300000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.