Schema for xenoRefSeqAli
  Database: droYak1    Primary Table: xenoRefSeqAli    Row Count: 339,469   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 3554int(10) unsigned range Number of bases that match that aren't repeats
misMatches 322int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 10int(10) unsigned range Number of inserts in query
qBaseInsert 1236int(10) unsigned range Number of bases inserted in query
tNumInsert 18int(10) unsigned range Number of inserts in target
tBaseInsert 5368int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_001258872varchar(255) values Query sequence name
qSize 5315int(10) unsigned range Query sequence size
qStart 10int(10) unsigned range Alignment start position in query
qEnd 5122int(10) unsigned range Alignment end position in query
tName chr2Lvarchar(255) values Target sequence name
tSize 22678881int(10) unsigned range Target sequence size
tStart 9935int(10) unsigned range Alignment start position in target
tEnd 19179int(10) unsigned range Alignment end position in target
blockCount 21int(10) unsigned range Number of blocks in alignment
blockSizes 27,120,25,111,779,1192,106,...longblob   Size of each block
qStarts 10,37,260,426,537,1316,2508...longblob   Start of each block in query.
tStarts 22659702,22659730,22661112,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        droYak1.all_est.qName (via xenoRefSeqAli.qName)
      droYak1.all_mrna.qName (via xenoRefSeqAli.qName)
      droYak1.xenoMrna.qName (via xenoRefSeqAli.qName)
      droYak1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      droYak1.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585355432200101236185368+-NM_0012588725315105122chr2L226788819935191792127,120,25,111,779,1192,106,643,443,109,122,9,43,9,15,21,30,23,5,14,30,10,37,260,426,537,1316,2508,2614,3257,3700,3809,4122,4133,4181,4199,4222,4683,4839,4862,4867,5092,22659702,22659730,22661112,22661137,22662963,22663800,22665049,22665421,22666126,22666903,22667075,22667239,22667248,22667306,22 ...
585355031700101109195377+-NM_0012588735179104986chr2L226788819935191792127,120,16,111,779,1192,106,643,443,109,122,9,43,9,15,21,30,23,5,14,30,10,37,248,290,401,1180,2372,2478,3121,3564,3673,3986,3997,4045,4063,4086,4547,4703,4726,4731,4956,22659702,22659730,22661094,22661137,22662963,22663800,22665049,22665421,22666126,22666903,22667075,22667239,22667248,22667306,22 ...
585365634400111187195244+-NM_0012588745390105197chr2L226788819935191792227,120,124,25,111,779,1192,106,643,443,109,122,9,43,9,15,21,30,23,5,14,30,10,37,186,335,501,612,1391,2583,2689,3332,3775,3884,4197,4208,4256,4274,4297,4758,4914,4937,4942,5167,22659702,22659730,22659859,22661112,22661137,22662963,22663800,22665049,22665421,22666126,22666903,22667075,22667239,22667248,22 ...
585375635300121216215135+-NM_0012588755528105335chr2L226788819935191792427,120,125,66,42,25,111,779,1192,106,643,443,109,122,9,43,9,15,21,30,23,5,14,30,10,37,186,311,413,473,639,750,1529,2721,2827,3470,3913,4022,4335,4346,4394,4412,4435,4896,5052,5075,5080,5305,22659702,22659730,22659859,22660077,22660198,22661112,22661137,22662963,22663800,22665049,22665421,22666126,22666903,22667075,22 ...
585355733400111187185353+-NM_0012728585281105088chr2L226788819935191792127,120,124,25,111,779,1192,106,643,443,122,9,43,9,15,21,30,23,5,14,30,10,37,186,335,501,612,1391,2583,2689,3332,3775,4088,4099,4147,4165,4188,4649,4805,4828,4833,5058,22659702,22659730,22659859,22661112,22661137,22662963,22663800,22665049,22665421,22666126,22667075,22667239,22667248,22667306,22 ...
585363833700101071195269+-NM_078715524895055chr2L226788819935191792127,120,124,111,779,1192,106,643,443,109,122,9,43,9,15,21,30,23,5,14,30,9,36,185,359,470,1249,2441,2547,3190,3633,3742,4055,4066,4114,4132,4155,4616,4772,4795,4800,5025,22659702,22659730,22659859,22661137,22662963,22663800,22665049,22665421,22666126,22666903,22667075,22667239,22667248,22667306,22 ...
585352632000101106185398+-NM_1643485155104962chr2L226788819935191792027,120,106,779,1192,106,643,443,109,122,9,43,9,15,21,30,23,5,14,30,10,37,265,377,1156,2348,2454,3097,3540,3649,3962,3973,4021,4039,4062,4523,4679,4702,4707,4932,22659702,22659730,22661112,22662963,22663800,22665049,22665421,22666126,22666903,22667075,22667239,22667248,22667306,22667325,22 ...
585373834600111105215160+-NM_164349539195198chr2L226788819935191792327,120,125,66,42,111,779,1192,106,643,443,109,122,9,43,9,15,21,30,23,5,14,30,9,36,185,310,412,502,613,1392,2584,2690,3333,3776,3885,4198,4209,4257,4275,4298,4759,4915,4938,4943,5168,22659702,22659730,22659859,22660077,22660198,22661137,22662963,22663800,22665049,22665421,22666126,22666903,22667075,22667239,22 ...
585363034200111055195272+-NM_1643505230105037chr2L226788819935191792127,120,124,106,781,1192,106,643,443,109,122,9,43,9,15,21,30,23,5,14,30,10,37,186,335,450,1231,2423,2529,3172,3615,3724,4037,4048,4096,4114,4137,4598,4754,4777,4782,5007,22659702,22659730,22659859,22661112,22662961,22663800,22665049,22665421,22666126,22666903,22667075,22667239,22667248,22667306,22 ...
585363134300111048195270+-NM_1643515225105032chr2L226788819935191792127,120,126,106,781,1192,106,643,443,109,122,9,43,9,15,21,30,23,5,14,30,10,37,186,330,445,1226,2418,2524,3167,3610,3719,4032,4043,4091,4109,4132,4593,4749,4772,4777,5002,22659702,22659730,22659859,22661112,22662961,22663800,22665049,22665421,22666126,22666903,22667075,22667239,22667248,22667306,22 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.