Schema for mrnaOrientInfo
  Database: droMoj1    Primary Table: mrnaOrientInfo    Row Count: 51   Data last updated: 2017-10-17
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom contig_12357varchar(255) values Reference sequence chromosome or scaffold
chromStart 283int(10) unsigned range Start position in chromosome
chromEnd 1885int(10) unsigned range End position in chromosome
name EU514471varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 2smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        droMoj1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585contig_123572831885EU51447122000
585contig_129310291331JF51248400000
585contig_1331001716EU51447122000
585contig_134745414945JF51248100000
585contig_136675931416EU417444020017
585contig_1366711931416EU41744201000
585contig_141205511611EU5954030180290
585contig_142853821268EU5954031180290
585contig_153249201050EU51447102000
585contig_1563710311381KC59813310000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.