Schema for mrnaOrientInfo
  Database: danRer4    Primary Table: mrnaOrientInfo    Row Count: 59,504   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 73smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 67209int(10) unsigned range Start position in chromosome
chromEnd 160268int(10) unsigned range End position in chromosome
name BC095673varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 21smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 46smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        danRer4.all_mrna.qName (via mrnaOrientInfo.name)
      danRer4.mgcFullMrna.qName (via mrnaOrientInfo.name)
      danRer4.mgcGenes.name (via mrnaOrientInfo.name)
      danRer4.refFlat.name (via mrnaOrientInfo.name)
      danRer4.refGene.name (via mrnaOrientInfo.name)
      danRer4.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
73chr167209160268BC0956732210460
619chr2045247914540447BC055195823300
586chr1162675167835BC1428833140380
73chr1247919271529EF46307942100
73chr1247919271529EU28455932100
73chr1247919276729EF46308052100
73chr1247919276729EF46308162100
73chr1248001276729BC17136260000
589chr1576068591396AY09462020170350
589chr1576263591350BC162215210000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.