Schema for all_est
  Database: danRer3    Primary Table: all_est    Row Count: 2,043,404   Data last updated: 2017-11-02
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 589smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 452int(10) unsigned Number of bases that match that aren't repeats
misMatches 1int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 0int(10) unsigned Number of inserts in target
tBaseInsert 0int(10) unsigned Number of bases inserted in target
strand -char(2) + or - for strand. First character query, second target (optional)
qName AA606023varchar(255) Query sequence name
qSize 460int(10) unsigned Query sequence size
qStart 7int(10) unsigned Alignment start position in query
qEnd 460int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 55805710int(10) unsigned Target sequence size
tStart 637823int(10) unsigned Alignment start position in target
tEnd 638276int(10) unsigned Alignment end position in target
blockCount 1int(10) unsigned Number of blocks in alignment
blockSizes 453,longblob Size of each block
qStarts 0,longblob Start of each block in query.
tStarts 637823,longblob Start of each block in target.

Connected Tables and Joining Fields
        danRer3.all_mrna.qName (via all_est.qName)
      danRer3.est.qName (via all_est.qName)
      danRer3.estOrientInfo.name (via all_est.qName)
      danRer3.intronEst.qName (via all_est.qName)
      danRer3.refGene.name (via all_est.qName)
      danRer3.refSeqAli.qName (via all_est.qName)
      danRer3.xenoMrna.qName (via all_est.qName)
      danRer3.xenoRefGene.name (via all_est.qName)
      danRer3.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5894521000000-AA6060234607460chr1558057106378236382761453,0,637823,
5892932000000+AA4950202950295chr1558057106382766385711295,0,638276,
5902872000073073-AA5664282900289chr155805710725375728737810,5,25,9,7,30,149,54,1,11,16,41,50,57,87,236,725375,725386,725392,725418,725428,725436,727197,728683,
5923301000022884+AA4952533310331chr1558057109446769478913152,103,76,0,152,255,944676,945562,947815,
5923770002243233+AA49499139718397chr1558057109455619491717104,53,28,56,15,50,71,18,122,175,203,260,276,326,945561,947815,947869,947987,948043,948058,949100,
5923110000000-AA49717933827338chr1558057109521829524931311,0,952182,
5922810000000-AA4949922887288chr1558057109522129524931281,0,952212,
5943071000055+AA4946813102310chr15580571013009931301306616,19,48,151,9,65,2,18,37,85,236,245,1300993,1301010,1301030,1301079,1301231,1301241,
6102241002411+AA5664312290229chr155805710332812233283483150,57,18,0,151,211,3328122,3328272,3328330,
6101841002200+AA5664731870187chr15580571033281273328312310,151,24,0,11,163,3328127,3328137,3328288,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.