Schema for estOrientInfo
  Database: cb1    Primary Table: estOrientInfo    Row Count: 2,411   Data last updated: 2016-05-28
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrUnvarchar(255) values Reference sequence chromosome or scaffold
chromStart 34329int(10) unsigned range Start position in chromosome
chromEnd 35011int(10) unsigned range End position in chromosome
name R04092varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        cb1.all_est.qName (via estOrientInfo.name)
      cb1.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chrUn3432935011R0409210000
585chrUn5736358129R0411510000
585chrUn9286693233R0473700000
585chrUn9298293149R0483400000
587chrUn353492353894R0326310000
587chrUn353635353922R0498910000
587chrUn354786355119R0326200000
588chrUn394211394528R0381400000
588chrUn396431396733R03938000016
589chrUn652808653253R05059-10000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.