Schema for estOrientInfo
  Database: canFam3    Primary Table: estOrientInfo    Row Count: 401,654   Data last updated: 2016-06-11
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1444smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 112634879int(10) unsigned range Start position in chromosome
chromEnd 112642886int(10) unsigned range End position in chromosome
name AB042265varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        canFam3.all_est.qName (via estOrientInfo.name)
      canFam3.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1444chr1112634879112642886AB04226530000
717chr191740338517411698AB04226410000
817chr363050560630507938AB04226650000
697chr11478997014790534AJ53689900400
697chr11479070514791221AJ536900001200
714chr11702049117020694AJ5368930010031
648chr1083641498364649AJ53706100100
796chr12770438327704957AJ5369010230470
854chr13537259035373872AJ536902-302000
861chr13622468436225161AJ53689600000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.