Schema for mrnaOrientInfo
  Database: anoGam1    Primary Table: mrnaOrientInfo    Row Count: 71,133   Data last updated: 2019-12-06
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr2Lvarchar(255) values Reference sequence chromosome or scaffold
chromStart 224339int(10) unsigned range Start position in chromosome
chromEnd 226050int(10) unsigned range End position in chromosome
name BX009327varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        anoGam1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
586chr2L224339226050BX00932730000
586chr2L224386225914BX03610530100
586chr2L224443225965BX02735830000
586chr2L224751225771BX03262410100
586chr2L225740226233BX03481320000
586chr2L225864226906BX009328-21000
586chr2L226203226903BX034814-10000
586chr2L226461226904BX027359-10000
586chr2L226461226948BX036106-10000
586chr2L226697227785BX01680820000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.