Schema for estOrientInfo
  Database: xenTro10    Primary Table: estOrientInfo    Row Count: 1,355,110   Data last updated: 2021-03-24
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 112504int(10) unsigned Start position in chromosome
chromEnd 114229int(10) unsigned End position in chromosome
name AL642220varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      xenTro10.all_est.qName (via estOrientInfo.name)
      xenTro10.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr1112504114229AL64222000000
585chr1130024130212AL640727000260
585chr1130131130678AL68172000000
586chr1200864201508AL885874-10000
586chr1200921205292AL63667130000
586chr1200939205289AL86431830200
586chr1200952205292AL86557830000
586chr1200954205292AL85374030000
586chr1200954207773AL65834730000
586chr1200969205284AL78875030000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.