Schema for xenoRefFlat
  Database: turTru2    Primary Table: xenoRefFlat    Row Count: 583,163   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName CPA3varchar(255) Name of gene as it appears in genome browser.
name NM_001870varchar(255) Name of gene
chrom JH498387varchar(255) Reference sequence chromosome or scaffold
strand -char(1) + or - for strand
txStart 13139int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 13625int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 13437int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 13625int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned Number of exons
exonStarts 13139,13398,longblob Exon start positions (or end positions for minus strand item)
exonEnds 13196,13625,longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      turTru2.xenoRefGene.name (via xenoRefFlat.name)
      turTru2.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
CPA3NM_001870JH498387-13139136251343713625213139,13398,13196,13625,
rassf2.LNM_001096747JH492340+16024163571602416357216024,16318,16267,16357,
marveld2bNM_001126406JH474239-1487231702281487231702285148723,153186,158083,169745,170033,148825,153343,158160,169973,170228,
SPCC4B3.18NM_001023064JH499423+27239273922723927392127239,27392,
Y67D8C.25NR_167558JH478790-85462115320115320115320685462,96946,98766,107208,107897,115138,85594,97069,98883,107291,108004,115320,
SNAPC1NM_001101244ABRN02473053-4195214195211419,521,
Terf1NM_001012464JH472786-17855180331786918033117855,18033,
CR88NM_126439JH483169+9665010489496650104894496650,102600,104682,104846,96713,102690,104712,104894,
SMIM10NM_001163442JH486635-64212643976421264397164212,64397,
dkk3bNM_001089545JH481697-5204610616552046106165352046,53251,106093,52085,53386,106165,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.