Schema for xenoRefFlat
  Database: thaSir1    Primary Table: xenoRefFlat    Row Count: 447,067   Data last updated: 2018-07-31
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName THBS1varchar(255) values Name of gene as it appears in genome browser.
name NM_001244536varchar(255) values Name of gene
chrom NW_013657680v1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 51639int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 66624int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 52201int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 66624int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 24int(10) unsigned range Number of exons
exonStarts 51639,51723,52201,52462,527...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 51660,51745,52339,52558,530...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      thaSir1.xenoRefGene.name (via xenoRefFlat.name)
      thaSir1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
THBS1NM_001244536NW_013657680v1-516396662452201666242451639,51723,52201,52462,52798,53798,54655,56350,56940,57713,58304,59349,59600,59847,60009,60315,60377,60983,60995,61942,64864,65 ...51660,51745,52339,52558,53066,54028,54890,56467,57103,57754,58521,59504,59724,59851,60179,60319,60548,60987,61164,62035,64918,65 ...
fgfr2NM_001243004NW_013659898v1-59204669615920466961459204,61033,64069,66841,59339,61118,64206,66961,
fgfr2NM_001243004NW_013660352v1+68719108007687191080071268719,70333,72838,74676,91455,93381,93633,96770,100846,102025,103756,107788,68827,70357,72997,74682,91579,93572,93636,96911,101017,102112,103876,108007,
VN2R555NM_001102452NW_013658114v1-6442076447826442076447822644207,644692,644273,644782,
VN2R555NM_001102452NW_013658467v1-1926942037281926941952283192694,195177,203644,192805,195228,203728,
VN2R555NM_001102452NW_013658472v1-4499764791274499764791273449976,450234,479082,450090,450483,479127,
CRATNM_001346548NW_013660485v1+409517958409517946104095,9538,10235,10354,11390,12436,13094,15695,16974,17730,4221,9701,10238,10530,11492,12550,13216,15819,17041,17958,
CRATNM_001346547NW_013660485v1+409517958409517946104095,9538,10235,10354,11390,12436,13094,15695,16974,17730,4221,9701,10238,10530,11492,12550,13216,15819,17041,17958,
Olfr1120NM_147029NW_013658632v1+2811133548902811133548903281113,354698,354833,281206,354743,354890,
Olfr1120NM_147029NW_013658733v1+37540693983754069398337540,69191,69311,37648,69281,69398,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.