Schema for mrnaOrientInfo
  Database: susScr11    Primary Table: mrnaOrientInfo    Row Count: 49,166   Data last updated: 2020-08-20
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 791int(10) unsigned range Start position in chromosome
chromEnd 3801int(10) unsigned range End position in chromosome
name AK394772varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 23smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      susScr11.all_mrna.qName (via mrnaOrientInfo.name)
      susScr11.refFlat.name (via mrnaOrientInfo.name)
      susScr11.refGene.name (via mrnaOrientInfo.name)
      susScr11.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr17913801AK394772223000
585chr19383803DQ84517820000
585chr133023426DQ17812900000
585chr12380440033AK3987305390590
585chr12381740033AK3917615610810
585chr12382540029AK3450516280440
585chr12382640033AK3439945300530
589chr1551454552772AK395166023000
589chr1560006576713AK34636210310570
589chr1560016576713AK39624210150410

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.