Schema for mrnaOrientInfo
  Database: sacCer3    Primary Table: mrnaOrientInfo    Row Count: 1,664   Data last updated: 2020-05-07
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrIvarchar(255) values Reference sequence chromosome or scaffold
chromStart 139677int(10) unsigned range Start position in chromosome
chromEnd 141416int(10) unsigned range End position in chromosome
name GQ871187varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      sacCer3.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
586chrI139677141416GQ87118700000
586chrI160274160401K0094800000
586chrI160276160401K0095200000
586chrI165862165989K0094800000
586chrI165864165989K0095200000
585chrIV8354783618K0020401000
585chrII1406518258M3249100000
585chrII4561246204EF12312410000
586chrII168414169545D17338100140
586chrII177792181341L2811000000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.