Schema for mrnaOrientInfo
  Database: macFas5    Primary Table: mrnaOrientInfo    Row Count: 19,303   Data last updated: 2020-08-19
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 74smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 1699586int(10) unsigned range Start position in chromosome
chromEnd 1751689int(10) unsigned range End position in chromosome
name AB060908varchar(255) values Accession of EST
intronOrientation 4smallint(6) range Orientation of introns with respect to EST
sizePolyA 100smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      macFas5.all_mrna.qName (via mrnaOrientInfo.name)
      macFas5.refFlat.name (via mrnaOrientInfo.name)
      macFas5.refGene.name (via mrnaOrientInfo.name)
      macFas5.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
74chr116995861751689AB0609084100000
604chr125334562586904AB1709139190400
605chr126561302678370AB17393720000
606chr127729652804238AB1744797100290
606chr128581312858417AB172873015000
619chr145610194565843AB17059920000
619chr145610214573914AB1686519590790
619chr145667064573162AB049840824000
619chr145833454585579AB17365600000
619chr145842864586671AB0568350210013

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.