Schema for estOrientInfo
  Database: equCab3    Primary Table: estOrientInfo    Row Count: 40,974   Data last updated: 2018-06-06
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 641smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 7406989int(10) unsigned range Start position in chromosome
chromEnd 7417054int(10) unsigned range End position in chromosome
name AB096934varchar(255) values Accession of EST
intronOrientation -3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        equCab3.all_est.qName (via estOrientInfo.name)
      equCab3.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
641chr174069897417054AB096934-30000
821chr203099845630999840AB086363-30000
743chr242071694120745853AB09693320000
1189chr37927553279280682AB08635812000
1108chr66861209768612228AB08635900000
1228chr78430789984312046AB53732840000
1228chr78430789984312046AB53732930000
791chr12710029927105753AW26093430000
810chr12961020529610696AW26091100000
810chr12961024729610950AW26105902000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.