Schema for estOrientInfo
  Database: danRer5    Primary Table: estOrientInfo    Row Count: 1,849,221   Data last updated: 2017-11-02
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom Zv7_NA101varchar(255) Reference sequence chromosome or scaffold
chromStart 126442int(10) unsigned Start position in chromosome
chromEnd 126827int(10) unsigned End position in chromosome
name AA495159varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 17smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 38smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        danRer5.all_est.qName (via estOrientInfo.name)
      danRer5.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Zv7_NA101126442126827AA4951590017038
585Zv7_NA10481180213467AA49734810000
585Zv7_NA5486741267676AA49528300000
585Zv7_NA50814251698AA49533700000
585Zv7_NA10673311035158AA54981030000
585Zv7_NA10921991520245AA55558900000
585Zv7_NA10921996621226AA56632210000
585Zv7_NA39719482413AA49482300000
585Zv7_NA113114682101AA56668010000
585Zv7_NA113140554796AA605735-20000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.