Schema for estOrientInfo
  Database: danRer11    Primary Table: estOrientInfo    Row Count: 1,782,138   Data last updated: 2017-11-02
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 6642int(10) unsigned Start position in chromosome
chromEnd 11621int(10) unsigned End position in chromosome
name AA606126varchar(255) Accession of EST
intronOrientation -4smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 24smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        danRer11.all_est.qName (via estOrientInfo.name)
      danRer11.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr1664211621AA606126-400024
585chr11007911761AA54979520000
585chr11007911766AA56667620000
586chr1152006152770AA494839-101700
586chr1156221157500AA49491310000
588chr1511727513752AA49461910000
589chr1524722524878AA56677200000
589chr1588478591334AA605922-3019045
589chr1610691613184AA658727-200019
592chr110120531012265AA54983901000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.