Schema for mrnaOrientInfo
  Database: ce11    Primary Table: mrnaOrientInfo    Row Count: 64,552   Data last updated: 2020-08-18
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrIvarchar(255) values Reference sequence chromosome or scaffold
chromStart 3746int(10) unsigned range Start position in chromosome
chromEnd 3909int(10) unsigned range End position in chromosome
name AY948656varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        ce11.all_mrna.qName (via mrnaOrientInfo.name)
      ce11.refFlat.name (via mrnaOrientInfo.name)
      ce11.refGene.name (via mrnaOrientInfo.name)
      ce11.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chrI37463909AY94865600000
585chrI5480654827EF04915800000
585chrI7185781071AB0968751100220
585chrI109267110043JQ23518930000
585chrI109570110059U6825820000
585chrI111291111425AY94870900000
73chrI128694133809U6786450000
586chrI146622154819AF229855180000
587chrI343540348364DQ90435260000
588chrIII429335431751LC1284094160350

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.