Schema for all_est
  Database: apiMel1    Primary Table: all_est    Row Count: 78,081   Data last updated: 2016-06-03
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 351int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 16int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 0int(10) unsigned range Number of inserts in target
tBaseInsert 0int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AB078166varchar(255) values Query sequence name
qSize 497int(10) unsigned range Query sequence size
qStart 98int(10) unsigned range Alignment start position in query
qEnd 467int(10) unsigned range Alignment end position in query
tName Group1.41varchar(255) values Target sequence name
tSize 139247int(10) unsigned range Target sequence size
tStart 65649int(10) unsigned range Alignment start position in target
tEnd 66018int(10) unsigned range Alignment end position in target
blockCount 1int(10) unsigned range Number of blocks in alignment
blockSizes 369,longblob   Size of each block
qStarts 98,longblob   Start of each block in query.
tStarts 65649,longblob   Start of each block in target.

Connected Tables and Joining Fields
        apiMel1.all_mrna.qName (via all_est.qName)
      apiMel1.estOrientInfo.name (via all_est.qName)
      apiMel1.intronEst.qName (via all_est.qName)
      apiMel1.xenoMrna.qName (via all_est.qName)
      apiMel1.xenoRefGene.name (via all_est.qName)
      apiMel1.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58535120160000+AB07816649798467Group1.4113924765649660181369,98,65649,
585356000001196+AB07818154497453Group10.157389210519110712245,111,97,342,10519,10960,
586391000004340+AB07815747752443Group12.10347726249026249757514,7,206,145,19,52,66,73,279,424,249026,249041,249049,249502,249738,
5851951000000+AB07816739297293Group14.423602294304945001196,97,94304,
58654810516512+AB07818780692652Group2.192801731340591346256443,63,21,11,12,4,92,535,598,619,636,648,134059,134503,134567,134589,134608,134621,
586489000113962-AB07815664453543Group4.145355719246619391759,102,43,208,127,101,111,213,256,464,192466,192475,192667,193440,193790,
587632100003247-AB07817373856689Group4.14535573866683875484139,135,263,96,49,188,323,586,386668,386885,387090,387452,
5875972010041049-AB07816364848648Group4.124145662985433001925266,209,97,17,11,0,266,475,572,589,298543,299423,299973,300071,300181,
5874901021161003+AB07818065475569Group4.62957412864822879788102,38,173,50,83,6,27,14,75,177,215,388,439,522,528,555,286482,286585,286714,287011,287061,287145,287936,287964,
5863860001129923-AB07816047874461Group5.124362492335132438224116,61,34,175,17,133,195,229,233513,235100,235161,243647,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.