Schema for xenoRefFlat
  Database: susScr11    Primary Table: xenoRefFlat    Row Count: 226,322   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName ube2f.Svarchar(255) values Name of gene as it appears in genome browser.
name NM_001091552varchar(255) values Name of gene
chrom chr16varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 26505607int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 26506047int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 26505607int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 26506047int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 3int(10) unsigned range Number of exons
exonStarts 26505607,26505745,26505933,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 26505721,26505928,26506047,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      susScr11.xenoMrna.qName (via xenoRefFlat.name)
      susScr11.xenoRefGene.name (via xenoRefFlat.name)
      susScr11.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
ube2f.SNM_001091552chr16-26505607265060472650560726506047326505607,26505745,26505933,26505721,26505928,26506047,
mapkapk2.LNM_001091551chr9+673151276736346567315127673634651167315127,67358770,67359093,67359432,67359989,67360081,67361232,67361696,67362402,67362590,67363357,67315255,67358916,67359158,67359512,67360081,67360115,67361309,67361820,67362485,67362671,67363465,
Pou2f1NM_001100639chr4-835962848377641083596528837764081983596284,83596398,83596522,83599053,83599879,83600017,83618726,83620689,83622528,83624751,83630068,83636367,83637861,83640296,83 ...83596341,83596413,83596839,83599142,83599944,83600225,83618832,83620869,83622674,83624893,83630242,83636462,83637988,83640485,83 ...
LOC100534396NM_001279590chr1+1205308031206267151205308031206267157120530803,120611459,120619523,120621856,120622553,120625346,120626610,120530933,120611617,120619607,120621947,120622663,120625589,120626715,
ECU04_1440NM_001041179chr1-56701099256701099225670,10905,5760,10992,
Xpo5NM_028198chr7-385313283856948938532877385693733638531328,38531376,38531994,38532762,38533165,38533485,38533767,38534340,38534925,38535729,38536398,38536873,38536902,38537500,38 ...38531358,38531472,38532013,38533015,38533330,38533626,38533872,38534424,38534928,38535783,38536491,38536877,38536949,38537596,38 ...
fz2NM_001275107chr10-58094913580966735809491358096673558094913,58095093,58095198,58095765,58096322,58095015,58095183,58095587,58095981,58096673,
RpL26NM_001275096chr16-51268742512762615126874251276261251268742,51276093,51268886,51276261,
ClC-cNM_001274993chr14-20045846200642062004584620064206820045846,20052222,20055341,20057793,20059039,20061889,20061947,20064083,20045978,20052459,20055428,20058145,20059116,20061892,20062154,20064206,
Clk4NM_001310291chr2+797295097975269279732659797523711879729509,79732659,79733055,79737373,79738709,79739198,79743567,79743754,79743776,79744143,79744479,79747728,79750960,79752041,79 ...79729617,79732820,79733061,79737596,79738800,79739265,79743682,79743757,79743942,79744238,79744603,79747817,79751040,79752132,79 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.