Schema for xenoRefFlat
  Database: musFur1    Primary Table: xenoRefFlat    Row Count: 313,724   Data last updated: 2020-08-19
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName Akr1c2varchar(255) values Name of gene as it appears in genome browser.
name NM_001013057varchar(255) values Name of gene
chrom GL896959varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 4152884int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 4160523int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 4152884int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 4160523int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 6int(10) unsigned range Number of exons
exonStarts 4152884,4154168,4154946,415...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 4153010,4154201,4155042,415...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      musFur1.xenoMrna.qName (via xenoRefFlat.name)
      musFur1.xenoRefGene.name (via xenoRefFlat.name)
      musFur1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
Akr1c2NM_001013057GL896959-415288441605234152884416052364152884,4154168,4154946,4158570,4159517,4160463,4153010,4154201,4155042,4158734,4159524,4160523,
Gm14434NM_001101804GL897008-25635886259346869086259313256358,354943,355273,397582,468537,614557,640234,694693,695188,748494,748697,748889,862405,256394,354976,355327,397636,468972,614637,640333,694936,695250,748529,748865,748992,862593,
Ube4bNM_001271198GL896903-324373273255966332438026325589412632437327,32437525,32437580,32437673,32437783,32437808,32438026,32438414,32439123,32445064,32446839,32451000,32461117,32462294,32 ...32437493,32437551,32437607,32437697,32437796,32437832,32438088,32438561,32439298,32445256,32446974,32451150,32461352,32462392,32 ...
LOC100282438NM_001155349GL897092+189736518978811897365189788141897365,1897575,1897644,1897776,1897479,1897620,1897671,1897881,
CPR3NM_001182437GL896901-24881018248811402488101824881140224881018,24881098,24881075,24881140,
CPR3NM_001182437GL896906+990614799063129906147990631219906147,9906312,
CPR3NM_001182437GL896909-16724033167241441672403316724144116724033,16724144,
CPR3NM_001182437GL896935+595061559510535950615595105315950615,5951053,
CPR3NM_001182437GL897009-214224721465422142247214654242142247,2143566,2145922,2146523,2142358,2143629,2146011,2146542,
Hbb-bsNM_001111269GL897188+134884213500631348842135005131348842,1348984,1349922,1348960,1349067,1350063,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.