Schema for estOrientInfo
  Database: fr2    Primary Table: estOrientInfo    Row Count: 382,279   Data last updated: 2019-03-09
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrMvarchar(255) values Reference sequence chromosome or scaffold
chromStart 1117int(10) unsigned range Start position in chromosome
chromEnd 1620int(10) unsigned range End position in chromosome
name AL841538varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        fr2.all_est.qName (via estOrientInfo.name)
      fr2.est.qName (via estOrientInfo.name)
      fr2.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chrM11171620AL84153800000
585chrM11201605AL84154700000
585chrM11201631AL84331302000
585chrM11381588AL84068601000
585chrM11491504AL83597700000
585chrM11571533AL84061900000
585chrM11661610AL84360900000
585chrM11961319AL84381700000
585chrM12031258AL84223501000
585chrM12421696AL84169800000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.