Schema for mrnaOrientInfo
  Database: droVir1    Primary Table: mrnaOrientInfo    Row Count: 131   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 75smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_0varchar(255) values Reference sequence chromosome or scaffold
chromStart 2459614int(10) unsigned range Start position in chromosome
chromEnd 2557531int(10) unsigned range End position in chromosome
name L43163varchar(255) values Accession of EST
intronOrientation 4smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        droVir1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
75scaffold_024596142557531L4316340000
620scaffold_045992234601469AM11399720000
77scaffold_046340284751652GQ49741680000
77scaffold_046340284751652GQ49741780000
77scaffold_046340284751652GQ49741880000
77scaffold_046340284751652GQ49741980000
77scaffold_046340284751652GQ49742080000
77scaffold_046340284751652GQ49742180000
77scaffold_046340284751652GQ49742280000
77scaffold_046340284751652GQ49742370000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.