Schema for estOrientInfo
  Database: danRer3    Primary Table: estOrientInfo    Row Count: 2,043,400   Data last updated: 2017-11-02
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 589smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 637823int(10) unsigned Start position in chromosome
chromEnd 638276int(10) unsigned End position in chromosome
name AA606023varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 7smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 15smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        danRer3.all_est.qName (via estOrientInfo.name)
      danRer3.est.qName (via estOrientInfo.name)
      danRer3.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
589chr1637823638276AA606023007015
589chr1638276638571AA495020000024
590chr1725375728737AA56642820000
592chr1944676947891AA49525320000
592chr1945561949171AA49499130000
592chr1952182952493AA497179002000
592chr1952212952493AA494992007029
594chr113009931301306AA49468100000
610chr133281223328348AA56643100000
610chr133281273328312AA56647300000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.