Schema for xenoRefFlat
  Database: cerSim1    Primary Table: xenoRefFlat    Row Count: 306,893   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName KLHL7varchar(255) values Name of gene as it appears in genome browser.
name NM_001012857varchar(255) values Name of gene
chrom JH767724varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 30698959int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 30767051int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 30698959int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 30767046int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 13int(10) unsigned range Number of exons
exonStarts 30698959,30700477,30702146,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 30699243,30700574,30702349,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        cerSim1.xenoRefGene.name (via xenoRefFlat.name)
      cerSim1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
KLHL7NM_001012857JH767724-306989593076705130698959307670461330698959,30700477,30702146,30704450,30725682,30736909,30739429,30746844,30747238,30748203,30748225,30766902,30766926,30699243,30700574,30702349,30704691,30725825,30737084,30739608,30746966,30747330,30748205,30748326,30766904,30767051,
ZNF674NM_001039891JH767800+8729601155692872960115569210872960,873171,874263,948713,948811,1134080,1154149,1154554,1155218,1155586,873074,873175,874359,948727,949106,1134239,1154220,1154800,1155254,1155692,
Gdf15NM_001330687JH767731-43907717439081704390771743908170243907717,43908074,43908059,43908170,
GABRA2NM_001330690JH767724-535101875364053153516915536398725053510187,53510294,53510345,53510451,53510590,53510677,53510788,53510903,53510927,53510953,53511191,53511652,53511806,53511910,53 ...53510238,53510326,53510438,53510499,53510668,53510728,53510875,53510915,53510940,53510999,53511267,53511718,53511900,53511936,53 ...
Mucl3NM_001003965JH767735-34391310343995353439131134399515634391310,34392408,34393303,34393408,34393555,34399433,34391458,34392441,34393366,34393495,34393629,34399535,
stard4NM_001017679JH767726+31429528314307483142952831430748231429528,31430628,31429648,31430748,
ADORA2BNM_001002944JH767766-279570628218072795706282180742795706,2795772,2796259,2821472,2795769,2796256,2796376,2821807,
nrd1bNM_001044715JH767796-4278649434144242786494341442244278649,4280532,4281584,4282085,4282430,4284333,4286659,4288721,4291082,4293632,4295548,4296195,4298180,4303099,4303436,4303594, ...4278712,4280643,4281663,4282139,4282462,4284444,4286710,4288856,4291229,4293751,4295612,4296318,4298205,4303153,4303499,4303699, ...
AI987944NM_183167JH767889-11338269942311338269942310113382,113682,524553,525009,526134,595475,595587,698696,699190,699373,113403,113949,524646,525042,526364,595503,595633,698854,699289,699423,
SkpANM_001297826JH767726+12279953122910711227995312291071312279953,12289047,12290927,12280049,12289170,12291071,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.