Schema for all_est
  Database: xenTro3    Primary Table: all_est    Row Count: 1,320,304   Data last updated: 2014-06-01
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 454int(10) unsigned Number of bases that match that aren't repeats
misMatches 1int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 6851int(10) unsigned Number of bases inserted in target
strand +char(2) + or - for strand. First character query, second target (optional)
qName AL778536varchar(255) Query sequence name
qSize 539int(10) unsigned Query sequence size
qStart 84int(10) unsigned Alignment start position in query
qEnd 539int(10) unsigned Alignment end position in query
tName GL172637varchar(255) Target sequence name
tSize 7817814int(10) unsigned Target sequence size
tStart 17461int(10) unsigned Alignment start position in target
tEnd 24767int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 97,101,257,longblob Size of each block
qStarts 84,181,282,longblob Start of each block in query.
tStarts 17461,20068,24510,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)
      xenTro3.all_mrna.qName (via all_est.qName)
      xenTro3.estOrientInfo.name (via all_est.qName)
      xenTro3.intronEst.qName (via all_est.qName)
      xenTro3.refGene.name (via all_est.qName)
      xenTro3.refSeqAli.qName (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5854541000026851+AL77853653984539GL17263778178141746124767397,101,257,84,181,282,17461,20068,24510,
5856433001134343+AL5943076514651GL17263778178142009025079579,535,14,4,14,4,83,618,633,637,20090,24510,25046,25060,25065,
58580352701200+AL8798558370837GL172637781781457447582822805,30,0,807,57447,58252,
58564610000614996-AL8548176470647GL17263778178147595491597720,87,97,130,122,43,148,0,20,107,204,334,456,499,75954,76176,76539,86918,87798,91226,91449,
58562710000514794-AL6452896280628GL17263778178147618591607678,97,130,122,43,158,0,78,175,305,427,470,76185,76539,86918,87798,91226,91449,
58558690100414518-AL7967615960596GL17263778178147655891672578,130,122,43,223,0,78,208,330,373,76558,86918,87798,91226,91449,
5856490000049264-AL8656266490649GL172637781781481684915975206,130,122,43,148,0,206,336,458,501,81684,86918,87798,91226,91449,
5856162000049264-AL7917166257625GL172637781781481774916565116,130,122,43,207,0,116,246,368,411,81774,86918,87798,91226,91449,
5854894000034236-AL7948024930493GL172637781781486943916724105,122,43,223,0,105,227,270,86943,87798,91226,91449,
586286032101100+AL6763626080608GL1726377817814260408261015288,519,0,89,260408,260496,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.