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Database: vicPac2 Primary Table: all_mrna Row Count: 247   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment On download server: MariaDB table dump directory
field | example | SQL type | info | description |
bin | 585 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
matches | 314 | int(10) unsigned | range | Number of bases that match that aren't repeats |
misMatches | 5 | int(10) unsigned | range | Number of bases that don't match |
repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
tNumInsert | 0 | int(10) unsigned | range | Number of inserts in target |
tBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in target |
strand | - | char(2) | values | + or - for strand. First character query, second target (optional) |
qName | AM998810 | varchar(255) | values | Query sequence name |
qSize | 824 | int(10) unsigned | range | Query sequence size |
qStart | 372 | int(10) unsigned | range | Alignment start position in query |
qEnd | 691 | int(10) unsigned | range | Alignment end position in query |
tName | ABRR02185281 | varchar(255) | values | Target sequence name |
tSize | 1064 | int(10) unsigned | range | Target sequence size |
tStart | 39 | int(10) unsigned | range | Alignment start position in target |
tEnd | 358 | int(10) unsigned | range | Alignment end position in target |
blockCount | 1 | int(10) unsigned | range | Number of blocks in alignment |
blockSizes | 319, | longblob | | Size of each block |
qStarts | 133, | longblob | | Start of each block in query. |
tStarts | 39, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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585 | 314 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | - | AM998810 | 824 | 372 | 691 | ABRR02185281 | 1064 | 39 | 358 | 1 | 319, | 133, | 39, |
585 | 313 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | - | AM998811 | 806 | 354 | 673 | ABRR02185281 | 1064 | 39 | 358 | 1 | 319, | 133, | 39, |
585 | 312 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | - | AM998812 | 824 | 372 | 691 | ABRR02185281 | 1064 | 39 | 358 | 1 | 319, | 133, | 39, |
585 | 314 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | - | AM998813 | 821 | 369 | 688 | ABRR02185281 | 1064 | 39 | 358 | 1 | 319, | 133, | 39, |
585 | 313 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | - | AM998814 | 794 | 342 | 661 | ABRR02185281 | 1064 | 39 | 358 | 1 | 319, | 133, | 39, |
585 | 312 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | - | AM998815 | 815 | 363 | 682 | ABRR02185281 | 1064 | 39 | 358 | 1 | 319, | 133, | 39, |
585 | 314 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | - | AM998816 | 821 | 369 | 688 | ABRR02185281 | 1064 | 39 | 358 | 1 | 319, | 133, | 39, |
585 | 311 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | - | AM998817 | 839 | 387 | 706 | ABRR02185281 | 1064 | 39 | 358 | 1 | 319, | 133, | 39, |
585 | 313 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | - | AM998818 | 818 | 366 | 685 | ABRR02185281 | 1064 | 39 | 358 | 1 | 319, | 133, | 39, |
585 | 314 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | - | AM998819 | 827 | 375 | 694 | ABRR02185281 | 1064 | 39 | 358 | 1 | 319, | 133, | 39, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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