Schema for all_mrna
  Database: strPur2    Primary Table: all_mrna    Row Count: 34,919   Data last updated: 2019-07-01
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 2836int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 232int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 2628int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName JT115212varchar(255) values Query sequence name
qSize 3069int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 3068int(10) unsigned range Alignment end position in query
tName Scaffold1varchar(255) values Target sequence name
tSize 640699int(10) unsigned range Target sequence size
tStart 119206int(10) unsigned range Alignment start position in target
tEnd 124902int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 2859,209,longblob   Size of each block
qStarts 1,2860,longblob   Start of each block in query.
tStarts 119206,124693,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      strPur2.all_est.qName (via all_mrna.qName)
      strPur2.mrnaOrientInfo.name (via all_mrna.qName)
      strPur2.refGene.name (via all_mrna.qName)
      strPur2.refSeqAli.qName (via all_mrna.qName)
      strPur2.xenoMrna.qName (via all_mrna.qName)
      strPur2.xenoRefGene.name (via all_mrna.qName)
      strPur2.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5852836023200012628-JT115212306903068Scaffold164069911920612490222859,209,1,2860,119206,124693,
5863526014500001510290+JT095966497604976Scaffold16406991646451799111653,131,1045,179,91,220,152,120,96,231,108,122,162,175,103,1988,0,53,184,1229,1408,1499,1719,1871,1991,2087,2318,2426,2548,2710,2885,2988,164645,165744,166589,168426,169256,170111,170940,171991,172883,173658,174118,174883,175813,176364,177093,177923,
587215100000113247-JT099075215102151Scaffold164069933643135182921605,546,0,1605,336431,351283,
587180800000119211-JT118672180801808Scaffold164069933643135745021605,203,0,1605,336431,357247,
58763901200021807-JT1123706510651Scaffold16406993658953683533226,228,197,0,226,454,365895,366456,368156,
58719800000054922-JT101067198001980Scaffold16406993759113828136785,232,228,246,107,382,0,785,1017,1245,1491,1598,375911,377051,378989,379494,380428,382431,
588462202460001022338+JT110241486804868Scaffold164069942702845423411624,151,252,231,197,324,135,86,121,73,2674,0,624,775,1027,1258,1455,1779,1914,2000,2121,2194,427028,438362,440629,441395,442379,446856,447607,448622,449468,450431,451560,
5881327018400021415-JT108460151101511Scaffold164069943355943648531153,195,163,0,1153,1348,433559,435190,436322,
58840020246000910450+JT108682424804248Scaffold164069943953645423410154,252,231,198,324,135,86,121,73,2674,0,154,406,637,835,1159,1294,1380,1501,1574,439536,443634,444424,445856,446856,447607,448622,449468,450431,451560,
5885390000000-JT1163545390539Scaffold16406995179905185291539,0,517990,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.