Schema for xenoRefFlat
  Database: sorAra1    Primary Table: xenoRefFlat    Row Count: 799,185   Data last updated: 2020-09-02
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName AIREvarchar(255) Name of gene as it appears in genome browser.
name NM_000383varchar(255) Name of gene
chrom scaffold_213270varchar(255) Reference sequence chromosome or scaffold
strand +char(1) + or - for strand
txStart 7356int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 7476int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 7476int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 7476int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned Number of exons
exonStarts 7356,longblob Exon start positions (or end positions for minus strand item)
exonEnds 7476,longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      sorAra1.xenoRefGene.name (via xenoRefFlat.name)
      sorAra1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
AIRENM_000383scaffold_213270+735674767476747617356,7476,
AIRENM_000383scaffold_253882+38742388503885038850238742,38817,38802,38850,
ALDH3A2NM_000382scaffold_218116+39101041239101041273910,6373,7205,7742,7891,8577,10337,3958,6571,7313,7884,7893,8727,10412,
ALDH3A2NM_000382scaffold_239136+33501157633501097663350,7228,10961,11067,11378,11514,3452,7462,10999,11080,11397,11576,
ALDH3A2NM_000382scaffold_207797+100055271000552731000,2336,5317,1236,2420,5527,
Gm32856NM_001376968scaffold_259282-42494445344453444534942494,42713,42794,43093,43382,43547,43799,44156,44387,42602,42767,42925,43271,43529,43691,43943,44363,44534,
RAB2ANM_001283960scaffold_229378-35663360483566336028135663,36048,
RAB2ANM_001283960scaffold_238066+763058079676367769831676305,76568,76604,76628,76663,76677,76695,76797,76879,76951,77050,77397,80323,80546,80686,80751,76568,76601,76628,76663,76677,76684,76713,76879,76951,77040,77096,77512,80496,80616,80699,80796,
TTYH1NM_001284058scaffold_54948+311167131116715311,610,1002,1155,1578,384,686,1058,1248,1671,
RAB2ANM_001283960scaffold_258952-199527872150276721995,2298,2298,2787,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.