Schema for mrnaOrientInfo
  Database: papAnu2    Primary Table: mrnaOrientInfo    Row Count: 1,306   Data last updated: 2020-05-09
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom AHZZ01125719varchar(255) values Reference sequence chromosome or scaffold
chromStart 3473int(10) unsigned range Start position in chromosome
chromEnd 3909int(10) unsigned range End position in chromosome
name AF416369varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      papAnu2.all_mrna.qName (via mrnaOrientInfo.name)
      papAnu2.refFlat.name (via mrnaOrientInfo.name)
      papAnu2.refGene.name (via mrnaOrientInfo.name)
      papAnu2.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585AHZZ0112571934733909AF41636910000
585AHZZ011500422541280KP89358911000
585AHZZ011500422541280KP89360411000
585AHZZ01168783655959AF41635300000
585AHZZ0118150347065142AF41636910000
585JH680984174610AF41636910000
585JH681355772910662AF05919170000
585JH681355772910662AF05919270000
585JH681355792810678U3562660000
585JH681355795810635LN85216760000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.