Schema for mrnaOrientInfo
  Database: oviAri1    Primary Table: mrnaOrientInfo    Row Count: 3,782   Data last updated: 2020-08-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 93195int(10) unsigned range Start position in chromosome
chromEnd 93453int(10) unsigned range End position in chromosome
name DQ239670varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      oviAri1.all_mrna.qName (via mrnaOrientInfo.name)
      oviAri1.refFlat.name (via mrnaOrientInfo.name)
      oviAri1.refGene.name (via mrnaOrientInfo.name)
      oviAri1.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr19319593453DQ23967000000
600chr120046692009593AY25391430000
600chr120205002022698EF58355830000
605chr126254932628369AF45045320000
606chr128256232826854AF12928811000
616chr141315384132291DQ23968400000
629chr158092325809467FJ96941502000
632chr162090176229035AJ54416030000
634chr165086266515538HQ2633832220430
634chr165086266515538HQ2633842220430

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.