Schema for xenoRefFlat
  Database: mm39    Primary Table: xenoRefFlat    Row Count: 197,343   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName XKR4varchar(255) values Name of gene as it appears in genome browser.
name NM_052898varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 3270069int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 3742017int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 3286244int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 3741571int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 59int(10) unsigned range Number of exons
exonStarts 3270069,3270271,3270366,327...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 3270248,3270287,3270442,327...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      mm39.xenoMrna.qName (via xenoRefFlat.name)
      mm39.xenoRefGene.name (via xenoRefFlat.name)
      mm39.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
XKR4NM_052898chr1-3270069374201732862443741571593270069,3270271,3270366,3270659,3270864,3270930,3271359,3271862,3275217,3275445,3275507,3275526,3275685,3275814,3276161,3276401, ...3270248,3270287,3270442,3270746,3270888,3270993,3271428,3271922,3275286,3275494,3275517,3275634,3275711,3275896,3276172,3276414, ...
Xkr4NM_001011971chr1-3284702374263632862443742487133284702,3285201,3285877,3285914,3491924,3740774,3740924,3742103,3742184,3742242,3742378,3742432,3742450,3285161,3285677,3285901,3287191,3492124,3740878,3741190,3742179,3742242,3742371,3742432,3742449,3742636,
XKR4NM_001033036chr1-328615737416693286244374157163286157,3491924,3740774,3740924,3741036,3741358,3287191,3492124,3740878,3741036,3741316,3741669,
xkr4NM_001012258chr1-328618837415713286244374157183286188,3286244,3286622,3491924,3740769,3740929,3741045,3741460,3286209,3286526,3287191,3492119,3740857,3740956,3741304,3741571,
xkr4NM_001032714chr1-328624437415743286244374157173286244,3286622,3491922,3740774,3740929,3741036,3741460,3286505,3286835,3492124,3740851,3740956,3741310,3741574,
xkr4NM_001032307chr1-328624437415753286244374157173286244,3491924,3740774,3740929,3741045,3741445,3741533,3287191,3492124,3740874,3740980,3741325,3741530,3741575,
xkr4NM_001077752chr1-374077637415713740776374157143740776,3740929,3741045,3741460,3740857,3740956,3741304,3741571,
RP1NM_001375654chr1-4069791442306040697914423048314069791,4077944,4089292,4094958,4112141,4162839,4189890,4190237,4212834,4218034,4218832,4234077,4240427,4267808,4276882,4296834, ...4069842,4077960,4089371,4095115,4112330,4163003,4189935,4190296,4212989,4218184,4218967,4234164,4240601,4267864,4277060,4297050, ...
Rp1NM_001195676chr1-4414416443061544147734423048144414416,4414556,4414830,4416111,4417038,4417411,4417434,4417914,4419139,4419957,4420083,4422132,4422424,4430422,4414527,4414829,4416111,4417038,4417291,4417430,4417911,4419136,4419952,4420080,4420314,4422304,4423060,4430615,
RP1NM_001280013chr1-4414827442304844148274423048264414827,4415026,4415314,4416202,4416520,4416757,4417115,4417237,4417549,4418229,4418317,4418680,4418869,4418921,4418925,4419104, ...4414953,4415062,4416052,4416517,4416617,4416895,4417233,4417288,4418148,4418257,4418631,4418788,4418920,4418925,4419027,4419113, ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.