Schema for estOrientInfo
  Database: hg38    Primary Table: estOrientInfo    Row Count: 10,001,332   Data last updated: 2019-09-20
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 14405int(10) unsigned Start position in chromosome
chromEnd 14592int(10) unsigned End position in chromosome
name AA411542varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 18smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hg38.all_est.qName (via estOrientInfo.name)
      hg38.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr11440514592AA411542000180
585chr11450914778AA32153200000
585chr11579917055AA37887700000
585chr11644116763AA84358000400
585chr11644118056AA934583-10600
585chr11661817298AA27841210000
585chr11669624803AA43414930000
585chr11674516934AA29182610000
585chr11675817390AA07956900100
585chr11698717692AA08402311000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.