Schema for mrnaOrientInfo
  Database: felCat5    Primary Table: mrnaOrientInfo    Row Count: 3,613   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 641smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrA1varchar(255) values Reference sequence chromosome or scaffold
chromStart 7418713int(10) unsigned range Start position in chromosome
chromEnd 7422374int(10) unsigned range End position in chromosome
name EU286552varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        felCat5.all_mrna.qName (via mrnaOrientInfo.name)
      felCat5.refFlat.name (via mrnaOrientInfo.name)
      felCat5.refGene.name (via mrnaOrientInfo.name)
      felCat5.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
641chrA174187137422374EU28655210000
83chrA11139821111455403AB1079552314000
757chrA12264275522644294JN9770530230400
769chrA12414307124188202X796828240490
797chrA12783168927832115GU13864500000
797chrA12783175527855614DQ02706430000
1164chrA17593886175980543EF68213840000
1185chrA17869326478693441AB43653100000
1204chrA18119273681204790FJ888637700230
1204chrA18120161881203933EU09024040000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.